PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G228900.1
Common NameB456_007G228900, LOC105804090
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 363aa    MW: 40134.1 Da    PI: 7.2917
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G228900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-12183229455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Gorai.007G228900.1 183 DHIIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYVKQLQ 229
                         699************************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.294179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-17183241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-10183229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-17183243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-12184233No hitNo description
SMARTSM003534.3E-14185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDSSSAKWLS ELGMDEYNII HQCHMNTLAE LTTTDDLATA LVGGGNLKQS FSSESYSSYP  60
NLYTKNTTTT ISGSSSIETP DYRPAKHLKT THHHHVPPKP SSPTSQILSF GNSNSLPATS  120
HHHYYNVDNT VNPKDETLSS GNMNFLPPVT NGPYESTNYA PKINNHGVKR TYSMTRTPSV  180
AQDHIIAERK RREKLSQRFI ALSAIVPGLK KMDKASVLGD AIKYVKQLQE RVKVLEEQTK  240
KRTVESVVFV RKSQLSADDE SSSCEDNNSE LGPSSDAALP EIEARVSDHD VLVRIHCENH  300
KGFVPKILSE IENLHLSVVN STALPFGNST LDITIIAKKD SEFNITVKDL VKDIRVALLK  360
FM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187192ERKRRE
2188193RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5783175e-45JX578317.1 Gossypium hirsutum clone NBRI_GE10312 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492039.10.0PREDICTED: transcription factor bHLH18-like
RefseqXP_012492038.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A0D2QXV70.0A0A0D2QXV7_G
STRINGPOPTR_0007s14480.17e-99(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-68bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]